PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0522s00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 192aa    MW: 21858.4 Da    PI: 10.1856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0522s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.4e-1273115247
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                       +y+GV++++ + +++AeIr p+++g   r++lg+f+ a e aka++
  Vang0522s00080.1  73 HYRGVHQRP-WVKFAAEIRNPNKRG--SRVWLGTFDIAIEVAKAYD 115
                       8********.**********96655..******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.26E-2272130No hitNo description
Gene3DG3DSA:3.30.730.107.0E-2472131IPR001471AP2/ERF domain
PfamPF008471.2E-773116IPR001471AP2/ERF domain
PROSITE profilePS5103218.97973131IPR001471AP2/ERF domain
SMARTSM003804.4E-1973137IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1573132IPR016177DNA-binding domain
PRINTSPR003675.3E-77485IPR001471AP2/ERF domain
PRINTSPR003675.3E-797113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MTTRSESVTP GSKPQIIDLD TPNPLTSLHK KPQLNWKPSL QIFLPKKAKW IIFGKPDPNL  60
TVVLLENQPE KKHYRGVHQR PWVKFAAEIR NPNKRGSRVW LGTFDIAIEV AKAYDCVGFR  120
LRDSKAILNF SLEAGMVSGV VEAEGERKRQ REEKEVEEVK SVVKKEKTME QEVNCFREMP  180
LTPLTPISNL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2372132464ATERF1
3gcc_A1e-2372132464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507066.14e-76PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803412e-43EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9TQV89e-77A0A0L9TQV8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5G29e-77A0A0S3R5G2_PHAAN; Uncharacterized protein
STRINGGLYMA17G15460.11e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-40ethylene responsive element binding factor 5